LocaliView: Workflow for registration and annotation of 2D rodent brain section images

LocaliView documentation

• What is LocaliView?
  • Which atlases are supported?
  • What is the output of LocaliView?
• How to access?
  • System requirements
  • Conditions of use
• Acknowledgements
• Contact us

Getting started

• My online Workspace
  • Getting Started with Your online Workspace
  • Workspace Features
    • Project Management
    • Data Upload
  • Next Steps
  • Need Help?

Upload files

• Preparing images for upload
  • Naming convention
• Data Upload
  • Are there any image requirements?
  • How do I upload my images?

Register to atlas

• WebAlign
  • How to use WebAlign?
  • Short keys
  • Control panel
  • Filmstrip
  • Navigation panel
  • Diagrams
• WebWarp
  • How to access WebWarp?
  • How to make adjustments?

Image annotation and visualisation

• LocaliZoom viewer and annotation tool
  • Basic operations
  • Controls:
  • Coordinates of points
  • Annotations
  • Controls:
• MeshView